Harry Potter

• Lily Evans
• The Marauders (collectively and individually, 'cept for Peter)
• James/Lily
• Remus/Sirius
• Severus and Lily
• Sirius/Lily and Remus/Lily, sometimes
• Luna Lovegood
• Harry/Luna
• Harry/Ginny
• Bellatrix Lestrange
• Peter Pettigrew

Doctor Who

• Rose Tyler
• Ten
• Ten/Rose (otp!)
• Martha Jones
• Donna Noble
• Ten and Martha

Torchwood

• Captain Jack Harkness
• Owen/Tosh
• Jack/Ianto
• Ianto Jones
• Jack/himself (lol)

How I Met Your Mother

• Barney Stinson
• Barney/Robin
• Marshall/Lily
• Robin and Lily
• Ted, Barney and Marshall
• Ted/Stella (when it existed)

Battlestar Galactica

• Kara Thrace
• Sam/Kara
• Helo/Athena
• Sam Anders
• Lee/Kara, sometimes
• Helo and Kara
• Lee/Dee (see, even their names are not ship compatible)

Gossip Girl

• Serena van der Woodsen
• Blair Waldorf
• Serena and Blair
• Chuck/Blair
• Rufus/Lily
• Georgina Sparks
• Nate/Blair

Dollhouse

• Victor/Sierra
• Mellie
• Paul/Mellie

Lost

• Sawyer/Juliet
• Jack/jears

Twilight

• Alice Cullen!
• Jasper/Alice

Firefly

• River Tam
• Simon and River
• Mal/Inara
• Simon/Kaylee
• Wash/Zoe

Heroes

• Elle Bishop
• Eden McCain
• Sylar/Elle

Alias

• Sark/Lauren
• Lauren Reed
• Julian Sark
• Sydney Bristow
• Vaughn/Sydney

Naruto

• Uchiha Sasuke
• Hatake Kakashi
• Kakashi/Sakura
• Minato/Kushina

Bleach

• Shiba Kuukaku
• Shihouin Yoruichi
• Urahara Kisuke
• Inchigo and Rukia
• Inoue Orihime
• Ulquiorra/Orihime
• Renji/Orihime
• Neliel Tu
• Kuchiki Rukia
• Aizen Sousuke
• Ichimaru Gin
• Hinamori Momo

D.Gray-man

• Rabi
• Road Kamelot
• Cross Marian
• Allen/Lenalee
• Arystar/Eliade
• Milennium Earl

Others

• Narnia - Lucy Pevensie, Aravis, The Pevensies
• His Dark Materials - Lyra Silvertongue, Will/Lyra, Asriel/Marisa
• Pride & Prejudice - Elizabeth Bennet, Darcy/Lizzy, Collins/patheticness
• Pushing Daisies - Chuck, Ned/Chuck
• A Series of Unfortunate Events - Violet, Quigley/Violet, both Beatrices
• Pirates of the Caribbean - Captain Jack Sparrow, Will/Elizabeth, Jack/Elizabeth
• Star Wars - Padmé Amidala, Anakin/Padmé, Han/Leia